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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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60 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ANKRD61
ENSSSCG00000007593
ENSG00000157999
Ankyrin repeat domain 61
Tissue enhanced
Detected in all
testis:
24.9
ANKRD7
ENSSSCG00000016623
ENSG00000106013
Ankyrin repeat domain 7
Tissue enriched
Detected in all
testis:
42.1
ARRDC5
ENSSSCG00000037183
ENSG00000205784
Arrestin domain containing 5
Tissue enriched
Detected in all
testis:
52.4
BPIFC
ENSSSCG00000000157
ENSG00000184459
BPI fold containing family C
Tissue enhanced
Detected in all
skin:
35.8
BRDT
ENSSSCG00000023654
ENSG00000137948
Bromodomain testis associated
Tissue enriched
Detected in many
testis:
97.4
C1orf141
ENSSSCG00000003803
ENSG00000203963
Chromosome 1 open reading frame 141
Tissue enriched
Detected in all
testis:
40.3
C3orf20
ENSSSCG00000040594
ENSG00000131379
Chromosome 3 open reading frame 20
Tissue enriched
Detected in all
testis:
62.1
CCDC36
ENSSSCG00000011376
ENSG00000173421
Coiled-coil domain containing 36
Tissue enhanced
Detected in many
testis:
65.9
CEP63
ENSSSCG00000011645
ENSG00000182923
Centrosomal protein 63
Tissue enhanced
Detected in all
testis:
80.9
DKKL1
ENSSSCG00000038579
ENSG00000104901
Dickkopf like acrosomal protein 1
Tissue enriched
Detected in all
testis:
104.9
DPEP3
ENSSSCG00000023514
ENSG00000141096
Dipeptidase 3
Tissue enriched
Detected in all
testis:
25.6
FAM229B
ENSSSCG00000036621
ENSG00000203778
Family with sequence similarity 229 member B
Tissue enhanced
Detected in all
testis:
33.3
GLIPR1L1
ENSSSCG00000022055
ENSG00000173401
GLIPR1 like 1
Tissue enriched
Detected in all
testis:
53.0
HEATR9
ENSSSCG00000017706
ENSG00000270379
HEAT repeat containing 9
Group enriched
Detected in many
choroid plexus:
8.2
testis:
22.9
HEMGN
ENSSSCG00000005371
ENSG00000136929
Hemogen
Tissue enriched
Detected in all
testis:
93.2
IL2
ENSSSCG00000033267
ENSG00000109471
Interleukin-2
Low tissue specificity
Detected in all
IQCF1
ENSSSCG00000029827
ENSG00000173389
IQ motif containing F1
Tissue enriched
Detected in many
testis:
75.6
IQCF5
ENSSSCG00000033277
ENSG00000214681
IQ motif containing F5
Tissue enhanced
Detected in all
testis:
38.7
MARCH11
ENSSSCG00000031525
ENSG00000183654
Membrane associated ring-CH-type finger 11
Tissue enriched
Detected in all
testis:
40.2
na
ENSSSCG00000001612
Tissue enhanced
Detected in all
testis:
39.2
na
ENSSSCG00000003052
ENSG00000131126
Tissue enriched
Detected in many
testis:
72.6
na
ENSSSCG00000017331
ENSG00000184361
Tissue enriched
Detected in all
testis:
46.8
na
ENSSSCG00000032403
Tissue enriched
Detected in many
testis:
33.8
na
ENSSSCG00000032939
Low tissue specificity
Detected in all
na
ENSSSCG00000032961
Tissue enriched
Detected in all
testis:
30.0
na
ENSSSCG00000033553
Tissue enriched
Detected in all
testis:
65.4
na
ENSSSCG00000033573
Low tissue specificity
Detected in many
na
ENSSSCG00000033594
ENSG00000160886
Low tissue specificity
Detected in all
na
ENSSSCG00000034298
Tissue enhanced
Detected in all
testis:
20.7
na
ENSSSCG00000034359
Tissue enriched
Detected in many
male glands:
31.3
na
ENSSSCG00000034769
Low tissue specificity
Detected in many
na
ENSSSCG00000035091
Tissue enhanced
Detected in all
testis:
29.4
na
ENSSSCG00000035260
Low tissue specificity
Detected in many
na
ENSSSCG00000036123
Tissue enhanced
Detected in all
testis:
27.4
na
ENSSSCG00000036349
Tissue enhanced
Detected in some
cornea:
4.3
testis:
5.8
na
ENSSSCG00000036777
Low tissue specificity
Detected in many
na
ENSSSCG00000037391
ENSG00000196456
Tissue enhanced
Detected in all
testis:
36.1
na
ENSSSCG00000037471
ENSG00000165131
Tissue enriched
Detected in many
testis:
54.7
na
ENSSSCG00000037887
Tissue enhanced
Detected in many
testis:
17.0
na
ENSSSCG00000038552
Tissue enriched
Detected in many
testis:
30.6
na
ENSSSCG00000039716
Tissue enhanced
Detected in all
testis:
56.1
na
ENSSSCG00000040260
ENSG00000263429
Tissue enhanced
Detected in all
testis:
38.7
PDILT
ENSSSCG00000007860
ENSG00000169340
Protein disulfide isomerase like, testis expressed
Tissue enriched
Detected in many
testis:
58.5
PDZD9
ENSSSCG00000026686
ENSG00000155714
PDZ domain containing 9
Tissue enriched
Detected in all
testis:
91.7
PLAC8L1
ENSSSCG00000014408
ENSG00000173261
PLAC8 like 1
Tissue enriched
Detected in many
testis:
40.3
RBM46
ENSSSCG00000008994
ENSG00000151962
RNA binding motif protein 46
Tissue enhanced
Detected in all
testis:
42.8
SCML2
ENSSSCG00000012155
ENSG00000102098
Scm polycomb group protein like 2
Tissue enhanced
Detected in all
testis:
26.0
SEPT12
ENSSSCG00000007933
ENSG00000140623
Septin-12
Tissue enriched
Detected in many
testis:
63.0
SPATA24
ENSSSCG00000014348
ENSG00000170469
Spermatogenesis-associated protein 24
Tissue enhanced
Detected in all
testis:
67.4
SPDYA
ENSSSCG00000008538
ENSG00000163806
Speedy protein A
Tissue enriched
Detected in all
testis:
52.2
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